School personnel information

写真b

NAKAMURA Haruki


Keyword

Biophysics, Protein Science, Bioinformatics

Mail Address

 Mail Address

URL

http://www.protein.osaka-u.ac.jp/rcsfp/pi/members/harukin/index.html

Gender

Male
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Organization 【 display / non-display 】

  • 1999.04.01 - , Institute of Protein Research, Professor, full time

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Education 【 display / non-display 】

The University of Tokyo Faculty of Science  Graduated 1975.03
The University of Tokyo   Completed 1980.03
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Employment Record 【 display / non-display 】

Head of the Research Center for Structural and Functional Proteomics, Institute for Protein Research 2006.04 -
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Research topics 【 display / non-display 】

  • Structure and Physical Properties of Proteins, Molecular Design, Protein Informatics, Structural Bioinformatics, Molecular Simulation, Database Construction and Analyses, Grid Computing
    Biophysics

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Academic Society Membership 【 display / non-display 】

  • Protein Society

  • Protein Science Society of Japan

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Academic Papers 【 display / non-display 】

  • Protein Data Bank Japan (PDBj): Maintaining a structural data archive and Resource Description Framework format, Kinjo AR, Suzuki H, Yamashita R, Ikegawa Y, Kudo T, Igarashi R, Kengaku Y, Cho H, Standley DM, Nakagawa A, Nakamura H, Nucleic Acids Research, 40:D453-D460, 2012.01, http://dx.doi.org/10.1093/nar/gkr811, Papers

  • A Free-Energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein in Explicit Solvent from Detailed All-Atom Computations, Higo Junichi, Nishimura Yoshifumi, Nakamura Haruki, J. Ame. Chem. Soc., 133, 10448-10458, 2011.05, Papers

  • Molecular dynamics scheme for precise estimation of electrostatic interaction via zero-dipole summation principle., Fukuda Ikuo, Yonezawa Yasushige, Nakamura Haruki, J. Chem. Phys., 134, 164107, 2011.04, Papers

  • Intra- and Intermolecular Interaction Inducing Pyramidalization on both sides of a Proline Di-peptide during Isomerization: an ab Initio QM/MM Molecular Dynamics Simulation Study in explicit water., Yasushige Yonezawa, Kazuto Nakata, Kota Sakakura, Toshikazu Takada, Haruki Nakamura, J. Am. Chem. Soc., 131 (12) 4535-4540, 2009.03, Papers

  • Comprehensive structural classification of ligand binding motifs in proteins, Akira R. Kinjo, Haruki Nakamura, Structure, 17 (2), 234-246, 2009.02, Papers

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Books 【 display / non-display 】

  • Textbook, Computational Protein Science: Basic Theories and Medicinal Applications, Narutoshi Kamiya, Junichi Higo, Yoshifumi Fukunishi, Haruki Nakamura, Kyoritsu Shuppan Co. Ltd., ISBN, 978-4-320-05694-7, 2009.08

  • Textbook, Application of Biological Databases and Web tools, version 2, Haruki Nakamura, Yodosha, ISBN, 978-4-7581-0811-9, 2007.10

  • Textbook, Protein Science, Haruki Nakamura, KAGAKUDOJIN, ISBN, 4-7598-1047-1, 2005.10

  • Textbook, Information Biology Lectures 2 (305), "Protein Structure Information: Homology modeling and molecular recognition", Haruki Nakamura, International Institute for Advanced Studies, 2003.07

  • Textbook, Bioinformatics, Chapter 7 "Biological Information from Protein Structures", Kengo Kinoshita, Haruki Nakamura, Tokyo KAGAKUDOJIN, 2003.03

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Patents / Utility models / Designs 【 display / non-display 】

  • Japan, Molecular simulation method and equipment, Yasushige Yonezawa, Toshikazu Takada, Kazuto Nakada, Toshihiro Sakuma, Haruki Nakamura, 2003-329751(Registration), 2003.09

  • Japan, simulation equipment, Ikuo Fukuda, Haruki Nakamura, 2001-226950(Registration), 2001.02

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Outside Activity Management 【 display / non-display 】

  • Academic society, Biosupercomputing Resraech Community, President, 2009.07 -

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